==inizio objective==
Prostate cancer is one of the most common cancer affecting men [1]. It is a highly heterogeneous disease with some tumors that progress to invasive, life-threatening disease, whereas others stay latent for the remainder of person’s lifetime. Moreover, prostate cancer is characterized by accumulation of multiple alterations across the genome.
The aim of this study is to identify new molecular markers in formalin-fixed paraffin-embedded (FFPE) tissue of primary tumors in castration resistant prostate cancer (CRPC) patients. To reach this objective, we will analyze the copy number variations (CNV) of 43 chromosomal regions linked to tumor aggressiveness and involved in prostate carcinogenesis, progression and metastasis using Multiplex ligation probe amplification (MLPA) approach.
==fine objective==
==inizio methodsresults==
FFPE samples were collected from 38 patients with prostate cancer after biopsy or radical prostatectomy. Participants were enrolled from the Department of Anatomo-pathology of Morgagni Pierantoni Hospital (Forlì, Italy) and Bufalini Hospital (Cesena, Italy). Five μm sections were cut, DNA isolation was performed using QIAamp DNA FFPE tissue kit (Qiagen), according to the manufacturer’s instructions and DNA was quantified by spectrophotometry (NanoDrop ND-1000, Celbio). MLPA analysis (MRC-Holland) was performed using 150 ng of DNA dissolved in 1X TE buffer (Promega) following the manufacturer’s instructions.
CNV analysis of 43 chromosomal regions was performed using X049-A1 Prostate cancer probemix (MRC-Holland) and was evaluated with Coffalyser software. Two different probes that recognize two different sites were used for 7 genes analyzed: PIK3CA, APC, EZH2, PTEN, ERG, TMPRSS2, AR. PTEN exon 4 was excluded from the analysis because it showed to be sensitive to evaporation during PCR reaction.
CNV values >1.3 were considered as amplification while values <0.7 were considered as deletion.
==fine methodsresults==
==inizio results==
Copy number variations of 38 patients were analyzed with MLPA kit. Three patients had a Gleason score ≤6, 9 patients had a Gleason score of 7, 12 patients had a Gleason score of 8, 10 patients had a Gleason score of 9, 3 had a Gleason score of 10 and 1 patient had Gleason score unknown.
Thirty eight genes were amplified in our case series and 13 presented amplification in > 30% of patients. The 13 genes, in decreasing order of percentages, are reported below: TMPRSS2 exon 6 (63.2%), TMPRSS2 exon 14 (57.9%), RAD21 (52.6%), MYC3 (50%), AR exon 6 (50%), AR exon 2 (42.1%), TCEB1 (39.5%), mir151 (39.5%), ERG exon 14 (36.8%), KIAA0196 (36.8%), MCM7 (36.8%), ZFHX3 (34.2%), ERG exon 6 (31.6%).
Thirty two genes were deleted in our case series and only mir15a presented a loss in 39.5% of patients. Moreover, 7 patients presented TMPRSS2-ERG fusion.
Statistical analysis will be performed to correlate CNV with clinical characteristics of patients.
==fine results==
==inizio discussions==
As androgen steroids play a key role in prostate cancer growth and development, the principal therapeutic approach is androgen-deprivation. However, hormone therapies lead to a decrease in testosterone and dihydrotestosterone (DHT) synthesis and patients with metastatic prostate cancer only benefit temporarily from these therapies, progressing to a castration-resistant status [2].
For this reason it could be important to genetically characterize prostate cancer tissues from CRPC patients to identify those with a worse disease progression.
MLPA analysis allows to perform genetic characterization and for finding new alterations and important variants in paraffin embedded tissues [3]. We found that 13 genes were frequently amplified in our case series (> 30% of patients) and 1 was deleted in about 40% of patients.
The most amplified genes included TMPRSS2, involved in the fusion with ERG that is detected in about half of prostate cancer with favourable prognosis [4], 8q region (RAD21, MYC3, TCEB1 and mir151) that is associated to aggressive behaviour and poor prognosis of prostate cancer [5,6], and AR that is associated to early pathogenesis as well as in progression to advanced stages and mostly found in CRPC [7-9]. Mir15a deletion is associated to cancer progression [10].
==fine discussions==
==inizio conclusion==
Our results revealed that several genomic alterations are common in CRPC patients and they could be crucial to identify more aggressive diseases, characterized by poor prognosis and associated to progression to advanced stages.
==fine conclusion==
==inizio reference==
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[10] Porkka KP, Ogg EL, Saramäki OR, Vessella RL, Pukkila H, Lähdesmäki H, van Weerden WM, Wolf M, Kallioniemi OP, Jenster G, Visakorpi T. The miR-15a-miR-16-1 locus is homozygously deleted in a subset of prostate cancers. Genes Chromosomes Cancer. 2011 Jul;50(7):499-509.
==fine reference==